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<rekado>zimoun: I pushed wip-bioconductor

<rekado>this includes an upgrade of R and a few more bioc package upgrades

<rekado>I’m manually building pigx on berlin to get most of the R packages built before merging

<zimoun>rekado: cool! Thank you.

<zimoun>Arf, yesterday I am complaining about non-free video meeting stuff. Today abou papers. :-)

<rekado>pigx-chipseq fails to build; will check details later

<rekado>may need some more fixes on top of wip-bioconductor

<zimoun>Damned! A person in my lab told me: «hey, we could redo this paper or this paper, as you prefer». Ok, but none of them provide publicly a single line of code to run the analysis… Is it the scientific method?

<zimoun>rekado: you pushed to Savanah the branch wip-bioconductor, right?

<rekado>yes

<zimoun>Ok, I will give a look more or less now.

<rekado>failures: /gnu/store/x0s4c965yn71jg19aw18pz57vskh97qq-r-car-3.1-1.drv, /gnu/store/x0s4c965yn71jg19aw18pz57vskh97qq-r-car-3.1-1.drv, /gnu/store/x0s4c965yn71jg19aw18pz57vskh97qq-r-car-3.1-1.drv

<rekado>damn

<rekado> /gnu/store/adh96wlla4kjqzffiim3l6wmxbp11anw-r-rstatix-0.7.0.drv, /gnu/store/98kdl0m2ygdpck72bzfg387rfc8d79jg-r-ggpubr-0.4.0.drv

<rekado>I’ll try to fix them

<zimoun_>my machine is slower… still compiling. :-)

<rekado>I’m doing this on berlin

<rekado>not the hacking part

<rekado>just the building

<rekado>but now I’m trying to reproduce this on my laptop and I get different derivations…

<zimoun_>wow, hum? do you mean the hash is different?

<rekado>I used guix time-machine --commit=f43a41d1966638b0b75a46276c76642cb89e3023 -- build pigx

<rekado>the derivation for r-car differs from the derivation I get when building r-car directly with commit f43a41d1966638b0b75a46276c76642cb89e3023

<rekado>I’m now almost done building pigx-rnaseq on my laptop, so maybe this was a transient error

<rekado>it built just fine on berlin

<rekado>I’ll merge it into master

<zimoun_>ok. I am recompiling the branch. Let me know if you need more help.

<zimoun_>rekado: why this «Add foo» followed right after by «foo: Update to»?

<zimoun_>ah that’s because author. :-)

<rekado>huh?

<rekado>do you have an example?

<rekado>(did I screw something up?)

<zimoun_>You applied Madalin patches and right after you updated. I just missed the author name. All is good. :-)

<rekado>ah, that.

<rekado>these patches were stuck in the queue; waited for the bioc upgrade, because I couldn’t build them any more since the new bioc release.

<rekado>we really should make some progress in moving to bioc git

IRC channel logs

2022-11-24.log