<zimoun>rekado_: so, does your answer mean you will take care about Bioconductor upgrade with the same move of the CRAN upgrade? ***civodul` is now known as civodul
<rekado_>zimoun: sorry for being unclear; no, I just wanted to make you aware of the pending CRAN mass upgrade, so that we can avoid conflicts. <rekado_>I’ll try to finish this today, and then you’re welcome to base your Bioconductor upgrade on top of that work. <rekado_>it’s super ugly because RStudio resets environment variables, so with that “env > ~/.Renviron” trick we make it load all those variables again. <rekado_>it’s a decent foundation that lets people run “install.packages” as if on a traditional system <rekado_>it is, but it also makes the use of guix.install from within R possible <rekado_>we can’t know in advance what directories under /gnu/store will be needed, and we can’t map new directories into a running container <rekado_>this has actually been a great source of disappointment to me. <rekado_>it would seem obvious to allow an outside process to map additional directories into an existing mount namespace, but I haven’t been able to make it work. <rekado_>civodul: should actually be --expose=/gnu/store, but it’s only marginally better <rekado_>zimoun: I’ll skip the upgrade of r-dt; too much JavaScript for one day. <zimoun>rekado_: Thanks for your answer. ***liberalartist is now known as philip1