IRC channel logs


back to list of logs

<civodul>PurpleSym, rekado_: howdy! we have a problem in guix-science:
<civodul>guix-science/packages/bioinformatics.scm:403:20: warning: possibly unbound variable `samtools-1.9'
<efraim>civodul: that was me, I didn't see any uses of it in the main repo
<civodul>efraim: ah ok
<civodul>so should we reinstate it, or move it to guix-science, or something else?
<efraim>I think move it to guix-science, it's "old and outdated" at this point
<civodul>sounds good
<civodul>can you take care of it?
<efraim>I don't know if I have write access to that repo actually
<efraim>I'll try building manta first with htslib/samtools-1.10
<efraim>it won't work with samtools-1.10, there's an issue with the headers test that got fixed either after 1.10 or 1.11
<efraim>newer versions are even worse
<civodul>ok, i'm totally ignorant about these things :-)
<civodul>we shouldn't let guix-science broken though
<civodul>BTW, i noticed that because hpcguix-web would fail to update its channels
<efraim>Now that I have it cloned locally I'll add it to my guix work profile
<efraim>Ok, back to AFK working on julia
<PurpleSym>I merged the fix. Thanks efraim!
<rekado_>samtools 1.9 has a different output format compared to other samtools versions
<rekado_>they changed things a number of times between major releases