*civodul starts "user tools for HPC" training session <civodul>when the organizers planned for it a year ago, they were aiming to have it in a beautify sunny place <civodul>needless to say, everyone ends up being at home in front of their screen <efraim>we're in the middle of our multi-day rain storm. It's dropped to about 19C, according to the dehumidifier in the bathroom. I finally turned off the air conditioner in the car during the rare times I leave the house :) <efraim>debconf21 should be in Haifa this august! i'm looking forward to that <civodul>oh neat! let's hope it can take place physically <civodul>we're doing an introduction round over BBB and it's a lot of "can you hear me?" and "X has troubles with their mic" <zimoun>yeah, I am a bit late but connected: 1 2 test micro, roger :-) <zimoun>Ah, I get “I moved to another job“ for Ben Woodcroft’s email from Australia; so I sent them an email and they is not using Guix anymore, sadly. They asked to remove from guix-hpc. ***rekado_ is now known as rekado
<zimoun>civodul: do I push to website-hpc in drafts/ the annual report? If yes, do I let previous sections since a lot of wording still make sense? <civodul>zimoun: i suppose last year's sectioning still makes sense, so we can keep it and adjust later if needed <zimoun>civodul: ok, I have tweaked to change the dates, so I am pushing. ***zimoun` is now known as zimoun
***zimoun` is now known as zimoun
<rekado>two of my colleagues looked at the translation of pigx-rnaseq from Snakemake to GWL and they said that it looks very clean and easy to understand <rekado>Snakemake: expand(os.path.join(SALMON_DIR, "{sample}", "quant.genes.sf"), sample=SAMPLES) <rekado>GWL: files SALMON_DIR / SAMPLES / "quant.genes.sf" <rekado>look at all those parentheses in the Snakemake example! ;) <civodul>you worked hard to optimize the paren count ;-) ***zimoun` is now known as zimoun
<rekado>I really need to figure out how to generate good error messages, though <rekado>with wisp it’s easy to screw up the indentation and get a seemingly nonsensical error message <rekado>right now I get this: pigx-rnaseq/pigx-rnaseq.w:388:65: Wrong type to apply: "HBR_Rep1.read1.fastq.gz" <rekado>and at the position that it reports there is nothing wrong <rekado>ah, I had a variable ‘file’ in scope that shadowed the ‘file’ macro, so I applied the file name instead of the macro… <rekado>here it would be nice if I could detect that the symbol 'file was used and that a global binding of the same name exists and has been shadowed.