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rekado_: yeah, ’file’ seems to improve readibility
zimoun: this is the latest version of pigx-rnaseq:
I found that workflows themselves must be able to require packages.
in pigx-rnaseq, before any process is even computed a sample sheet must be parsed
this requires guile-dsv, so the workflow needs to be executed in an environment where guile-dsv is available irrespective of the declared package inputs of each process.
the parsed sample sheet is used to define SAMPLES, which is then used to get concrete per-sample processes
rekado_ is now known as rekado
I’m observing a real-world example of breakage due to mismatched Guix versions in the workflow langueg.
time to work on inferiors
the problem here seems to be that the released version of Guix contains the newer version of nmap with the non-free npsl license.
but the running Guix does not have a definition for that license.